STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98277.1Site-specific recombinase, phage integrase family; COG: COG0582; Pfam: PF00589; InterPro: IPR013762; Belongs to the 'phage' integrase family. (304 aa)    
Predicted Functional Partners:
EFE98276.1
Excisionase-like protein; Pfam: PF07825.
     
 0.520
EFE94900.1
Hypothetical protein; COG: COG3140; Pfam: PF03701; InterPro: IPR005371; Belongs to the UPF0181 family.
  
     0.476
EFE93579.1
Hypothetical protein; COG: COG3593.
  
     0.463
dnaC
IstB-like ATP-binding protein; COG: COG1484; Pfam: PF01695.
  
     0.441
fimA2
Fimbrial protein; COG: COG3539; Pfam: PF00419; InterPro: IPR014779.
  
     0.426
YdjM
Putative membrane-bound metal-dependent hydrolase; COG: COG1988; Pfam: PF04307; InterPro: IPR007404.
  
     0.414
EFE98122.1
Hypothetical protein.
  
     0.410
fimI
Fimbrial protein; Pfam: PF00419; InterPro: IPR014779.
  
     0.410
bcfF
Fimbrial protein; COG: COG3539; Pfam: PF00419; InterPro: IPR014779.
  
     0.410
rof
Modulator of Rho-dependent transcription termination (ROF); COG: COG4568; Pfam: PF07073; InterPro: IPR009778.
  
     0.409
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.