STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Era_1Hypothetical protein; COG: COG3596; Pfam: PF01926; InterPro: IPR002917. (291 aa)    
Predicted Functional Partners:
EFE98251.1
Hypothetical protein; COG: COG2378; Pfam: PF00392.
 
    0.621
EFE97638.1
Hypothetical protein.
  
     0.618
EFE97640.1
DEAD/DEAH box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
  
     0.586
wcaG
NAD-binding protein; COG: COG0451; Pfam: PF07993; InterPro: IPR016040.
  
     0.583
klcA
Antirestriction protein; Pfam: PF03230; InterPro: IPR004914.
 
     0.565
mcrB
ATPase family associated with various cellular activities (AAA); COG: COG1401; Pfam: PF07728; InterPro: IPR011704.
 
     0.524
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.495
NlpE
Hypothetical protein; COG: COG3015; Pfam: PF04170; InterPro: IPR007298.
  
     0.484
EFE97637.1
Hypothetical protein; COG: COG4268.
 
     0.470
EFE98252.1
Hypothetical protein.
       0.458
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.