STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98251.1Hypothetical protein; COG: COG2378; Pfam: PF00392. (233 aa)    
Predicted Functional Partners:
EFE98252.1
Hypothetical protein.
       0.787
EFE98263.1
Hypothetical protein.
 
     0.717
EFE98301.1
Site-specific recombinase, phage integrase family; Pfam: PF00589; InterPro: IPR013762.
  
     0.716
TyrP_1
Transmembrane amino acid transporter protein; COG: COG0814; Pfam: PF01490.
  
     0.643
Era_1
Hypothetical protein; COG: COG3596; Pfam: PF01926; InterPro: IPR002917.
 
    0.621
EFE98306.1
Hypothetical protein.
  
    0.610
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
  
    0.483
rusA
Crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
  
     0.411
EFE94040.1
Bacteriophage lambda integrase domain protein; COG: COG0582; Pfam: PF09003,PF00589; InterPro: IPR013762; Belongs to the 'phage' integrase family.
  
     0.402
apeE
Outer membrane autotransporter barrel domain protein; Pfam: PF00657,PF03797; InterPro: IPR001087.
  
     0.400
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.