Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFE93526.1 | cfa | HMPREF0758_4859 | HMPREF0758_0137 | Hypothetical protein; COG: COG3272; Pfam: PF04463,PF08349; InterPro: IPR007553. | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | 0.566 |
cfa | EFE93526.1 | HMPREF0758_0137 | HMPREF0758_4859 | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | Hypothetical protein; COG: COG3272; Pfam: PF04463,PF08349; InterPro: IPR007553. | 0.566 |
cfa | entF | HMPREF0758_0137 | HMPREF0758_2676 | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | AMP-binding enzyme; COG: COG1020; Pfam: PF00668,PF00501,PF00550,PF00975; InterPro: IPR010071. | 0.509 |
cfa | hflC | HMPREF0758_0137 | HMPREF0758_0138 | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | SPFH/Band 7/PHB domain protein; COG: COG0330; Pfam: PF01145; InterPro: IPR001107. | 0.550 |
cfa | ybbJ | HMPREF0758_0137 | HMPREF0758_0139 | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | Nodulation efficiency protein D; COG: COG1585; Pfam: PF01957; InterPro: IPR002810. | 0.550 |
entF | cfa | HMPREF0758_2676 | HMPREF0758_0137 | AMP-binding enzyme; COG: COG1020; Pfam: PF00668,PF00501,PF00550,PF00975; InterPro: IPR010071. | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | 0.509 |
hflC | cfa | HMPREF0758_0138 | HMPREF0758_0137 | SPFH/Band 7/PHB domain protein; COG: COG0330; Pfam: PF01145; InterPro: IPR001107. | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | 0.550 |
hflC | ybbJ | HMPREF0758_0138 | HMPREF0758_0139 | SPFH/Band 7/PHB domain protein; COG: COG0330; Pfam: PF01145; InterPro: IPR001107. | Nodulation efficiency protein D; COG: COG1585; Pfam: PF01957; InterPro: IPR002810. | 0.962 |
ybbJ | cfa | HMPREF0758_0139 | HMPREF0758_0137 | Nodulation efficiency protein D; COG: COG1585; Pfam: PF01957; InterPro: IPR002810. | Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333. | 0.550 |
ybbJ | hflC | HMPREF0758_0139 | HMPREF0758_0138 | Nodulation efficiency protein D; COG: COG1585; Pfam: PF01957; InterPro: IPR002810. | SPFH/Band 7/PHB domain protein; COG: COG0330; Pfam: PF01145; InterPro: IPR001107. | 0.962 |