STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98097.1GumN protein; COG: COG3735; Pfam: PF07446. (267 aa)    
Predicted Functional Partners:
ybaK
YbaK/EbsC protein; COG: COG2606; Pfam: PF04073; InterPro: IPR007214; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
    
 0.813
EFE97704.1
Putative protein smp; COG: COG3726.
  
     0.690
wzyE
ECA biosynthesis protein WzyE; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.660
Spy_2
Hypothetical protein; COG: COG3678; Pfam: PF07813.
  
     0.640
cpxP
Periplasmic repressor CpxP; COG: COG3678; Pfam: PF07813.
  
     0.623
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.621
wzzE
Chain length determinant protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.614
EFE96463.1
Hypothetical protein.
  
     0.601
YdgH_1
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.597
wecF
TDP-Fuc4NAc:lipid II Fuc4Nac transferase; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.571
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.