STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdaRPutative sugar diacid recognition; COG: COG3835; Pfam: PF05651; InterPro: IPR008599. (377 aa)    
Predicted Functional Partners:
gntT
Putative bacteriochlorophyll 4-vinyl reductase; COG: COG2610; Pfam: PF03600.
 
     0.827
glxK
Glycerate kinase; COG: COG1929; Pfam: PF02595; InterPro: IPR004381; Belongs to the glycerate kinase type-1 family.
 
    0.757
EFE95955.1
Hypothetical protein; COG: COG3290; 2.7.3.-.
  
     0.535
glxK2
Glycerate kinase; COG: COG1929; Pfam: PF02595; InterPro: IPR004381; Belongs to the glycerate kinase type-1 family.
 
    0.522
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
       0.468
dpiA
Response regulator receiver domain protein; COG: COG4565; Pfam: PF00072; InterPro: IPR001789.
  
     0.466
YaeP
Hypothetical protein; Pfam: PF06786; InterPro: IPR009624; Belongs to the UPF0253 family.
  
     0.460
citA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG3290; Pfam: PF00989,PF02518; InterPro: IPR003594.
  
     0.450
chb-2
Chitobiase; COG: COG3525; Pfam: PF03173,PF02838,PF00728,PF03174; InterPro: IPR013781.
  
     0.440
EFE97952.1
Hypothetical protein.
  
    0.410
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.