STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicJTransporter, major facilitator family protein; COG: COG2211; Pfam: PF07690; InterPro: IPR001927. (443 aa)    
Predicted Functional Partners:
EFE98118.1
ADP-ribosylglycohydrolase; Pfam: PF03747; InterPro: IPR005502.
 
     0.776
scrK
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
       0.773
farR
UbiC transcription regulator-associated domain protein; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR011663.
 
  
 0.626
YbaN
Hypothetical protein; COG: COG2832; Pfam: PF04304; InterPro: IPR007401.
       0.459
priC
Primosomal replication protein priB and priC; COG: COG3923; Pfam: PF07445; InterPro: IPR010890.
       0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.