STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
troBABC transporter, ATP-binding protein; COG: COG1121; Pfam: PF00005; InterPro: IPR003593. (237 aa)    
Predicted Functional Partners:
PsaA
ABC transporter, substrate-binding protein; COG: COG0803; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.984
MntB_1
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.981
sitC
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.981
sitA
ABC transporter, substrate-binding protein; COG: COG0803; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.930
mtsC
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.929
EFE98133.1
Hypothetical protein.
       0.773
znuB
High-affinity zinc transporter membrane component; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.769
znuA
Putative high-affinity zinc transporter periplasmic component; COG: COG4531; Pfam: PF01297; InterPro: IPR006127.
 
  
 0.744
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
     
 0.469
zur
Transcriptional regulator, Fur family; COG: COG0735; Pfam: PF01475; InterPro: IPR002481; Belongs to the Fur family.
  
  
 0.430
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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