STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TomBHypothetical protein. (122 aa)    
Predicted Functional Partners:
EFE94080.1
Hypothetical protein; COG: COG5633; Pfam: PF07233; InterPro: IPR010824.
  
     0.774
uspB
Universal stress protein UspB.
  
   
 0.773
pspG
Phage shock protein G; InterPro: IPR014318.
  
     0.773
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.773
EFE95445.1
Hypothetical protein.
  
     0.772
YciC
Hypothetical protein; Pfam: PF06790; InterPro: IPR009627.
  
     0.771
aaeX
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
     0.770
EFE96463.1
Hypothetical protein.
  
     0.768
EFE94171.1
Hypothetical protein.
  
     0.767
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.763
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.