STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
topACompetence protein ComEA helix-hairpin-helix repeat region; COG: COG1555; InterPro: IPR004509. (125 aa)    
Predicted Functional Partners:
hofC
Bacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992.
  
  
 0.715
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
 
  
 0.702
gspO
Type 4 prepilin-like protein leader peptide-processing enzyme domain protein; Pfam: PF01478; InterPro: IPR000045; Belongs to the peptidase A24 family.
   
  
 0.601
gspO2
Peptidase, A24 family; COG: COG1989; Pfam: PF01478; InterPro: IPR000045; Belongs to the peptidase A24 family.
   
  
 0.601
ppiD
PPIC-type PPIASE domain protein; COG: COG0760; Pfam: PF09312,PF00639; InterPro: IPR000297.
       0.532
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
  
  
 0.517
ispE
Twitching motility protein; COG: COG2805; Pfam: PF00437; InterPro: IPR006321.
  
  
 0.517
queF
Queuine synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.505
queF-2
Queuine synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.505
comF
comF family protein; COG: COG1040; Pfam: PF00156.
  
  
 0.493
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.