STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yajRTransporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701. (430 aa)    
Predicted Functional Partners:
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.551
cyoA
Ubiquinol oxidase, subunit II; COG: COG1622; Pfam: PF00116,PF06481; InterPro: IPR006333.
  
  
 0.437
cyoB
Cytochrome o ubiquinol oxidase, subunit I; COG: COG0843; Pfam: PF00115; InterPro: IPR014207; Belongs to the heme-copper respiratory oxidase family.
       0.426
cyoC
Cytochrome o ubiquinol oxidase, subunit III; COG: COG1845; Pfam: PF00510; InterPro: IPR000298.
       0.426
cyoD
Cytochrome o ubiquinol oxidase, subunit IV; COG: COG3125; Pfam: PF03626; InterPro: IPR014210.
       0.426
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.