STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licTPRD domain protein; COG: COG3711; Pfam: PF03123,PF00874; InterPro: IPR011608. (307 aa)    
Predicted Functional Partners:
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
 
 0.930
ascF
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR003352.
 
 0.878
scrA
PTS system sucrose-specific IIBC component; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR010973.
 
 0.837
treB
PTS system, glucose-like IIB component; Pfam: PF00367,PF02378; InterPro: IPR001996; overlaps another CDS with the same product name.
 
 
 0.813
mtlA
PTS system, mannitol-specific IIC component; COG: COG2213; Pfam: PF02378,PF02302,PF00359; InterPro: IPR004718.
 
  
 0.787
treB2
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF02378; overlaps another CDS with the same product name.
 
 
 0.762
nagE
PTS system, N-acetylglucosamine-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974.
 
 
 0.744
ybbF
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR003352.
 
 0.702
malX-2
PTS system maltose and glucose-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367; InterPro: IPR011301.
 
 
 0.691
ptsG4
PTS system, glucose-like IIB component; COG: COG1263; Pfam: PF02378,PF00367; InterPro: IPR003352.
 
 
 0.681
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.