Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFE94097.1 | rdgC | HMPREF0758_4192 | HMPREF0758_0251 | Putative ACR, COG1399; COG: COG1399; Pfam: PF02620; InterPro: IPR003772. | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | 0.434 |
| EFE94097.1 | rpoA | HMPREF0758_4192 | HMPREF0758_0937 | Putative ACR, COG1399; COG: COG1399; Pfam: PF02620; InterPro: IPR003772. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.781 |
| EFE96776.1 | rdgC | HMPREF0758_1635 | HMPREF0758_0251 | SCP-2 sterol transfer family protein; COG: COG3165; Pfam: PF06843; InterPro: IPR010668. | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | 0.468 |
| atpE | rdgC | HMPREF0758_1329 | HMPREF0758_0251 | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | 0.409 |
| atpE | rpoA | HMPREF0758_1329 | HMPREF0758_0937 | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
| atpE | rpoB | HMPREF0758_1329 | HMPREF0758_1662 | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.470 |
| mak | rdgC | HMPREF0758_0250 | HMPREF0758_0251 | ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600. | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | 0.560 |
| parC | rdgC | HMPREF0758_1963 | HMPREF0758_0251 | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | 0.422 |
| parC | rpoA | HMPREF0758_1963 | HMPREF0758_0937 | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.439 |
| parC | rpoB | HMPREF0758_1963 | HMPREF0758_1662 | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.583 |
| rdgC | EFE94097.1 | HMPREF0758_0251 | HMPREF0758_4192 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | Putative ACR, COG1399; COG: COG1399; Pfam: PF02620; InterPro: IPR003772. | 0.434 |
| rdgC | EFE96776.1 | HMPREF0758_0251 | HMPREF0758_1635 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | SCP-2 sterol transfer family protein; COG: COG3165; Pfam: PF06843; InterPro: IPR010668. | 0.468 |
| rdgC | atpE | HMPREF0758_0251 | HMPREF0758_1329 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.409 |
| rdgC | mak | HMPREF0758_0251 | HMPREF0758_0250 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600. | 0.560 |
| rdgC | parC | HMPREF0758_0251 | HMPREF0758_1963 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | 0.422 |
| rdgC | rpoA | HMPREF0758_0251 | HMPREF0758_0937 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.507 |
| rdgC | rpoB | HMPREF0758_0251 | HMPREF0758_1662 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.418 |
| rdgC | sbcB | HMPREF0758_0251 | HMPREF0758_2905 | Recombination associated protein; May be involved in recombination; Belongs to the RdgC family. | Exonuclease domain protein; COG: COG2925; Pfam: PF00929,PF08411; InterPro: IPR013620. | 0.555 |
| rpoA | EFE94097.1 | HMPREF0758_0937 | HMPREF0758_4192 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative ACR, COG1399; COG: COG1399; Pfam: PF02620; InterPro: IPR003772. | 0.781 |
| rpoA | atpE | HMPREF0758_0937 | HMPREF0758_1329 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.693 |
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