STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98209.1Hypothetical protein; Pfam: PF06675; InterPro: IPR009561. (309 aa)    
Predicted Functional Partners:
aroM
AroM protein; Pfam: PF07302; InterPro: IPR010843.
 
     0.950
EFE98210.1
OPT oligopeptide transporter protein; Pfam: PF03169; InterPro: IPR004813.
 
     0.922
NikB
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 
 0.805
KdgR_1
IclR helix-turn-helix domain protein; Pfam: PF09339,PF01614; InterPro: IPR014757.
 
     0.603
EFE93849.1
Hypothetical protein.
  
     0.555
dppF
ABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
  
    0.524
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.469
GsiC_1
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.424
GsiD_1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.423
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.