STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KdgR_1IclR helix-turn-helix domain protein; Pfam: PF09339,PF01614; InterPro: IPR014757. (257 aa)    
Predicted Functional Partners:
uca
Urea carboxylase; COG: COG0439; Pfam: PF00289,PF02786,PF02785,PF02626,PF02682,PF00364; InterPro: IPR014084.
  
    0.942
EFE98210.1
OPT oligopeptide transporter protein; Pfam: PF03169; InterPro: IPR004813.
 
     0.716
EFE98209.1
Hypothetical protein; Pfam: PF06675; InterPro: IPR009561.
 
     0.603
aroM
AroM protein; Pfam: PF07302; InterPro: IPR010843.
 
     0.580
ybgJ
TIGR00370 family protein; COG: COG2049; Pfam: PF02682; InterPro: IPR010016.
  
    0.535
dur
Biotin-dependent carboxylase domain protein; COG: COG1984; Pfam: PF02626; InterPro: IPR003778.
  
    0.522
YdfH_2
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
    0.465
YaiA
Hypothetical protein.
       0.436
gerE
Transcriptional regulator, LuxR family; Pfam: PF00196; InterPro: IPR011991.
  
  
 0.416
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.