STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97975.1TENA/THI-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family. (214 aa)    
Predicted Functional Partners:
thiD
Phosphomethylpyrimidine kinase; COG: COG0351; Pfam: PF08543; InterPro: IPR004399.
 
 
 0.989
thiM
Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.
 
 
 0.957
SgcQ
Membrane complex biogenesis protein, BtpA family; COG: COG0434; Pfam: PF03437; InterPro: IPR005137.
 
    0.935
thiK
Putative thiamine diphosphokinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
   
 
  0.913
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
     
  0.900
EFE97983.1
Hypothetical protein; COG: COG5426; Pfam: PF07090; InterPro: IPR010768.
 
     0.711
RbsK_1
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
   
 0.686
Opd
Phosphotriesterase family protein; COG: COG1735; Pfam: PF02126; InterPro: IPR001559.
 
     0.678
RbsB_1
Sugar-binding domain protein; COG: COG1879; Pfam: PF00532.
  
     0.670
EFE93950.1
Phage tail tape measure protein, TP901 family; COG: COG5281; InterPro: IPR010090.
 
     0.666
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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