STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97983.1Hypothetical protein; COG: COG5426; Pfam: PF07090; InterPro: IPR010768. (251 aa)    
Predicted Functional Partners:
Opd
Phosphotriesterase family protein; COG: COG1735; Pfam: PF02126; InterPro: IPR001559.
 
     0.944
ArgE_1
Peptidase, ArgE/DapE family; COG: COG0624; Pfam: PF01546,PF07687; InterPro: IPR002933.
 
     0.889
xylG
ABC transporter, ATP-binding protein; COG: COG1129; Pfam: PF00005; InterPro: IPR003593.
 
     0.798
RbsB_1
Sugar-binding domain protein; COG: COG1879; Pfam: PF00532.
 
     0.769
SgcQ
Membrane complex biogenesis protein, BtpA family; COG: COG0434; Pfam: PF03437; InterPro: IPR005137.
 
     0.759
EFE97975.1
TENA/THI-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.
 
     0.711
rbsC
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
     0.665
EFE93592.1
Hypothetical protein.
  
     0.564
EFE94053.1
ADP-ribosylglycohydrolase; COG: COG1397; Pfam: PF03747; InterPro: IPR005502.
  
     0.554
EFE94852.1
Hydrolase, alpha/beta domain protein; Pfam: PF00561.
  
     0.511
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.