STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iucCSiderophore biosynthesis protein, IucA/IucC family; COG: COG4264; Pfam: PF04183; InterPro: IPR007310. (582 aa)    
Predicted Functional Partners:
iucA
Siderophore biosynthesis protein, IucA/IucC family; Pfam: PF04183; InterPro: IPR007310.
  
0.987
IucB
Hypothetical protein; COG: COG1670.
 
  
 0.986
IucD
Hypothetical protein; COG: COG3486; 1.14.13.59.
 
  
 0.984
iutA
TonB-dependent siderophore receptor; COG: COG1629; Pfam: PF07715,PF00593; InterPro: IPR010105.
 
  
 0.797
ddc
Pyridoxal-dependent decarboxylase domain protein; COG: COG0076; Pfam: PF00282; InterPro: IPR002129.
 
  
 0.543
shiF
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
 
  
 0.540
EFE98032.1
Hypothetical protein.
       0.489
ViuB_1
Siderophore-interacting FAD-binding domain protein; COG: COG2375; Pfam: PF08021,PF04954; InterPro: IPR007037.
 
   
 0.461
fhuD
Periplasmic binding protein; COG: COG0614; Pfam: PF01497; InterPro: IPR002491.
 
   
 0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.