STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98038.1Putative urate catabolism protein; COG: COG0726; Pfam: PF01522. (312 aa)    
Predicted Functional Partners:
hyuE
Asp/Glu/Hydantoin racemase; COG: COG4126; Pfam: PF01177; InterPro: IPR015942.
 
  
  0.990
uraD
OHCU decarboxylase.
 
 
  0.939
amaB
Allantoate amidohydrolase; COG: COG0624; Pfam: PF01546,PF07687; InterPro: IPR010158.
 
  
  0.933
YdfH_1
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
    0.855
uraH
Hydroxyisourate hydrolase; COG: COG2351; Pfam: PF00576; InterPro: IPR000895; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.742
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; COG: COG4631; Pfam: PF01315,PF02738; InterPro: IPR014309; overlaps another CDS with the same product name.
 
     0.689
xdhC
Xanthine dehydrogenase accessory protein XdhC; COG: COG1975; Pfam: PF02625; InterPro: IPR014308.
 
     0.688
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.666
ncs1
NCS1 nucleoside transporter family protein; COG: COG1953; Pfam: PF02133; InterPro: IPR001248.
 
     0.655
xdhA
Xanthine dehydrogenase, small subunit; COG: COG4630; Pfam: PF00111,PF01799,PF00941,PF03450; InterPro: IPR014307; overlaps another CDS with the same product name.
 
     0.648
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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