STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncs1NCS1 nucleoside transporter family protein; COG: COG1953; Pfam: PF02133; InterPro: IPR001248. (486 aa)    
Predicted Functional Partners:
hyuE
Asp/Glu/Hydantoin racemase; COG: COG4126; Pfam: PF01177; InterPro: IPR015942.
 
     0.883
uraD
OHCU decarboxylase.
 
   
 0.696
YdfH_1
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
     0.695
EFE98038.1
Putative urate catabolism protein; COG: COG0726; Pfam: PF01522.
 
     0.655
pbuX
Xanthine permease; COG: COG2233; Pfam: PF00860; InterPro: IPR006042.
 
  
 0.553
amaB
Allantoate amidohydrolase; COG: COG0624; Pfam: PF01546,PF07687; InterPro: IPR010158.
 
  
 0.550
yicE
Putative permease; COG: COG2233; Pfam: PF00860; InterPro: IPR006042.
 
  
 0.478
uraH
Hydroxyisourate hydrolase; COG: COG2351; Pfam: PF00576; InterPro: IPR000895; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.475
iadA
Beta-aspartyl peptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
  
  
 0.468
EFE98025.1
SIS domain protein; Pfam: PF01418,PF01380; InterPro: IPR000281.
 
     0.444
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.