STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DkgBOxidoreductase, aldo/keto reductase family protein; COG: COG0656; Pfam: PF00248; InterPro: IPR001395. (267 aa)    
Predicted Functional Partners:
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.663
ftsZ2
PrkA AAA domain protein; COG: COG2766; Pfam: PF08298,PF06798; InterPro: IPR013153.
   
    0.543
LgrB
AMP-binding enzyme; COG: COG0365; Pfam: PF00501.
  
  
 0.522
fabG
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
  
 
 0.518
ElaB_1
Hypothetical protein; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
   
    0.502
PgaC
Glycosyltransferase, group 2 family protein; COG: COG4261; Pfam: PF00535; InterPro: IPR001173.
  
    0.494
EFE98057.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; COG: COG0824; Pfam: PF03061.
  
    0.488
acpP-2
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
  
 0.488
EFE98063.1
Hypothetical protein; COG: COG0236.
  
  
 0.488
EFE98064.1
Hypothetical protein; COG: COG0204; Pfam: PF01553; 2.3.1.51.
   
   0.488
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.