STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LgrBAMP-binding enzyme; COG: COG0365; Pfam: PF00501. (454 aa)    
Predicted Functional Partners:
ecs
FabA-like domain protein; COG: COG0764; Pfam: PF07977.
   
 0.968
PgaC
Glycosyltransferase, group 2 family protein; COG: COG4261; Pfam: PF00535; InterPro: IPR001173.
  
 0.959
EFE98057.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; COG: COG0824; Pfam: PF03061.
 
  
 0.952
EFE98052.1
Hypothetical protein; COG: COG4706; 4.2.1.-.
 
     0.951
EFE98055.1
Hypothetical protein.
 
     0.951
EFE98061.1
Hypothetical protein; COG: COG4648.
 
     0.951
EFE98056.1
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
  
 0.950
EFE98054.1
Hypothetical protein.
 
     0.949
fabB
3-oxoacyl-(acyl carrier protein) synthase I; COG: COG0304; Pfam: PF00109,PF02801; InterPro: IPR016038; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.948
acpP-2
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
   
 0.948
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.