STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiARibosomal subunit interface protein; COG: COG1544; Pfam: PF02482; InterPro: IPR003489. (115 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
 
 0.906
EFE97816.1
Hypothetical protein.
       0.773
ptsP
Phosphoenolpyruvate-protein phosphotransferase; COG: COG1080; Pfam: PF00381,PF05524,PF00391,PF02896,PF00359; InterPro: IPR006318.
  
  
 0.754
rpsU
Ribosomal protein S21; COG: COG0828; Pfam: PF01165; InterPro: IPR001911; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.718
rpsI
Ribosomal protein S9; COG: COG0103; Pfam: PF00380; InterPro: IPR000754; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.712
rpmA
Ribosomal protein L27; COG: COG0211; Pfam: PF01016; InterPro: IPR001684; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.711
rpsP
Ribosomal protein S16; COG: COG0228; Pfam: PF00886; InterPro: IPR000307; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.706
ptsN
PTS IIA-like nitrogen-regulatory protein PtsN; COG: COG1762; Pfam: PF00359; InterPro: IPR002178.
  
  
 0.706
rpmH
Ribosomal protein L34; Pfam: PF00468; InterPro: IPR000271.
   
 
 0.705
rpmC
Ribosomal protein L29; COG: COG0255; Pfam: PF00831; InterPro: IPR001854; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.696
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.