STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97870.1Hypothetical protein. (82 aa)    
Predicted Functional Partners:
EFE97873.1
Creatininase; COG: COG1402; Pfam: PF02633.
       0.791
gntR
Transcriptional regulator, GntR family; Pfam: PF00392; InterPro: IPR011991.
       0.785
PanF_1
Transporter, SSS family; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.784
iadA
Beta-aspartyl peptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
       0.773
queD
Queuosine biosynthesis protein QueD; COG: COG0720; Pfam: PF01242; InterPro: IPR007115.
       0.563
BtrR
DegT/DnrJ/EryC1/StrS aminotransferase family protein; COG: COG0399; Pfam: PF01041; InterPro: IPR015421; Belongs to the DegT/DnrJ/EryC1 family.
       0.531
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.