STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proVABC transporter, ATP-binding protein; COG: COG4175; Pfam: PF00005; InterPro: IPR003593. (285 aa)    
Predicted Functional Partners:
ProW_1
ABC transporter, permease protein; COG: COG4176; Pfam: PF00528; InterPro: IPR000515.
 0.998
proX
ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069; InterPro: IPR007210.
 
 0.995
proW
ABC transporter, permease protein; COG: COG4176; Pfam: PF00528; InterPro: IPR000515.
 0.993
proX2
ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069; InterPro: IPR007210.
 
 0.981
proX2-2
ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069; InterPro: IPR007210.
 
 0.980
proV-2
Glycine betaine/L-proline transport ATP binding subunit; COG: COG4175; Pfam: PF00005,PF00571; InterPro: IPR005892.
  
  
 
0.903
hutH2
Phenylalanine and histidine ammonia-lyase; COG: COG2986; Pfam: PF00221; InterPro: IPR005921.
  
    0.797
yehW
ABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515.
  
 0.726
yehY
ABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515.
  
 0.680
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
    0.476
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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