STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garL2-dehydro-3-deoxyglucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily. (277 aa)    
Predicted Functional Partners:
gudD
Glucarate dehydratase; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354; overlaps another CDS with the same product name.
 
 
 0.984
glxR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
 
  0.968
garD
Galactarate dehydratase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
 
  0.937
gudD2
Putative glucarate dehydratase; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354; overlaps another CDS with the same product name.
 
 
 0.930
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; COG: COG3971; Pfam: PF01689; InterPro: IPR012690.
  
 0.919
hpcD
5-carboxymethyl-2-hydroxymuconate delta isomerase; COG: COG3232; Pfam: PF02962; InterPro: IPR014347.
 
  
 0.819
gudP
Putative glucarate transporter; Pfam: PF07690; InterPro: IPR004744.
  
    0.806
Hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
     
 0.800
hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
     
 0.800
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase; COG: COG3384; Pfam: PF02900; InterPro: IPR011984.
 
  
 0.786
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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