STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CdaR_2Putative sugar diacid recognition; COG: COG3835; Pfam: PF05651; InterPro: IPR008599. (384 aa)    
Predicted Functional Partners:
EFE95955.1
Hypothetical protein; COG: COG3290; 2.7.3.-.
  
     0.528
EFE98054.1
Hypothetical protein.
  
     0.515
pgpB-2
Phosphatidylglycerophosphatase B; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
  
     0.503
citA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG3290; Pfam: PF00989,PF02518; InterPro: IPR003594.
  
     0.488
glxK2
Glycerate kinase; COG: COG1929; Pfam: PF02595; InterPro: IPR004381; Belongs to the glycerate kinase type-1 family.
 
    0.487
degP
Peptidase Do; COG: COG0265; Pfam: PF00089,PF00595; InterPro: IPR011782; Belongs to the peptidase S1C family.
       0.457
glxK
Glycerate kinase; COG: COG1929; Pfam: PF02595; InterPro: IPR004381; Belongs to the glycerate kinase type-1 family.
 
    0.453
dpiA
Response regulator receiver domain protein; COG: COG4565; Pfam: PF00072; InterPro: IPR001789.
  
     0.437
YaeP
Hypothetical protein; Pfam: PF06786; InterPro: IPR009624; Belongs to the UPF0253 family.
  
     0.417
glxR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
    0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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