ampE protein (Serratia odorifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ampE

Regulatory protein AmpE; COG: COG3725. (284 aa)

Predicted Functional Partners:

EFE95974.1

0.767

EFE94277.1

0.760

bssS

0.728

aaeX

0.727

YnfB

0.727

EFE94427.1

0.704

EFE96807.1

0.703

YobD

0.700

bcsE

0.697

EFE95752.1

0.676

Your Current Organism:

Serratia odorifera

NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFE94277.1	EFE94427.1	HMPREF0758_4372	HMPREF0758_4001	Hypothetical protein.	Hypothetical protein.	0.738
EFE94277.1	EFE95752.1	HMPREF0758_4372	HMPREF0758_2607	Hypothetical protein.	Hypothetical protein.	0.592
EFE94277.1	EFE95974.1	HMPREF0758_4372	HMPREF0758_2412	Hypothetical protein.	Hypothetical protein.	0.771
EFE94277.1	EFE96807.1	HMPREF0758_4372	HMPREF0758_1401	Hypothetical protein.	Hypothetical protein.	0.743
EFE94277.1	YnfB	HMPREF0758_4372	HMPREF0758_3822	Hypothetical protein.	Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.	0.702
EFE94277.1	YobD	HMPREF0758_4372	HMPREF0758_3322	Hypothetical protein.	Hypothetical protein; COG: COG4811; Pfam: PF06173; InterPro: IPR009328.	0.764
EFE94277.1	aaeX	HMPREF0758_4372	HMPREF0758_1825	Hypothetical protein.	Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.	0.623
EFE94277.1	ampE	HMPREF0758_4372	HMPREF0758_0494	Hypothetical protein.	Regulatory protein AmpE; COG: COG3725.	0.760
EFE94277.1	bcsE	HMPREF0758_4372	HMPREF0758_1492	Hypothetical protein.	Cellulose biosynthesis protein BcsE.	0.752
EFE94277.1	bssS	HMPREF0758_4372	HMPREF0758_4200	Hypothetical protein.	Biofilm formation regulatory protein BssS.	0.658
EFE94427.1	EFE94277.1	HMPREF0758_4001	HMPREF0758_4372	Hypothetical protein.	Hypothetical protein.	0.738
EFE94427.1	EFE95752.1	HMPREF0758_4001	HMPREF0758_2607	Hypothetical protein.	Hypothetical protein.	0.711
EFE94427.1	EFE95974.1	HMPREF0758_4001	HMPREF0758_2412	Hypothetical protein.	Hypothetical protein.	0.742
EFE94427.1	EFE96807.1	HMPREF0758_4001	HMPREF0758_1401	Hypothetical protein.	Hypothetical protein.	0.749
EFE94427.1	YnfB	HMPREF0758_4001	HMPREF0758_3822	Hypothetical protein.	Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.	0.773
EFE94427.1	YobD	HMPREF0758_4001	HMPREF0758_3322	Hypothetical protein.	Hypothetical protein; COG: COG4811; Pfam: PF06173; InterPro: IPR009328.	0.699
EFE94427.1	aaeX	HMPREF0758_4001	HMPREF0758_1825	Hypothetical protein.	Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.	0.546
EFE94427.1	ampE	HMPREF0758_4001	HMPREF0758_0494	Hypothetical protein.	Regulatory protein AmpE; COG: COG3725.	0.704
EFE94427.1	bcsE	HMPREF0758_4001	HMPREF0758_1492	Hypothetical protein.	Cellulose biosynthesis protein BcsE.	0.631
EFE94427.1	bssS	HMPREF0758_4001	HMPREF0758_4200	Hypothetical protein.	Biofilm formation regulatory protein BssS.	0.772