STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdDPrepilin-type cleavage/methylation N-terminal domain protein; COG: COG4969; Pfam: PF07963; InterPro: IPR001082; Belongs to the N-Me-Phe pilin family. (188 aa)    
Predicted Functional Partners:
hofC
Bacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992.
 
   
 0.878
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
  
 0.874
EFE96124.1
yecA family protein; COG: COG3079; Pfam: PF03695; InterPro: IPR005356; Belongs to the UPF0149 family.
  
     0.653
EFE95867.1
Hypothetical protein; COG: COG2976.
  
     0.615
nadC
Quinolinate phosphoribosyl transferase, C-terminal domain protein; COG: COG0157; Pfam: PF01729; InterPro: IPR013785.
  
  
 0.612
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF07660,PF03958,PF00263; InterPro: IPR013355.
 
   
 0.570
EFE97088.1
Hypothetical protein; Pfam: PF07305; InterPro: IPR009918.
  
     0.565
mltB
Lytic murein transglycosylase B; COG: COG2951; InterPro: IPR011757.
 
     0.513
dapX
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.496
ispE
Twitching motility protein; COG: COG2805; Pfam: PF00437; InterPro: IPR006321.
 
  
 0.480
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.