STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofCBacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992. (399 aa)    
Predicted Functional Partners:
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
 
 
 0.993
ispE
Twitching motility protein; COG: COG2805; Pfam: PF00437; InterPro: IPR006321.
 
 
 0.964
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF07660,PF03958,PF00263; InterPro: IPR013355.
 
 
 
 0.898
ppdD
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG4969; Pfam: PF07963; InterPro: IPR001082; Belongs to the N-Me-Phe pilin family.
 
   
 0.878
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
 
  
 0.813
ppdA
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG2165; Pfam: PF07963.
  
  
 0.798
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
  
  
 0.798
gspO
Type 4 prepilin-like protein leader peptide-processing enzyme domain protein; Pfam: PF01478; InterPro: IPR000045; Belongs to the peptidase A24 family.
 
  
 0.764
gspO2
Peptidase, A24 family; COG: COG1989; Pfam: PF01478; InterPro: IPR000045; Belongs to the peptidase A24 family.
 
  
 0.764
topA
Competence protein ComEA helix-hairpin-helix repeat region; COG: COG1555; InterPro: IPR004509.
  
  
 0.715
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.