STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiBThiamine/thiamine pyrophosphate ABC transporter, thiamine/thiamine pyrophospate-binding protein; COG: COG4143; Pfam: PF01547; InterPro: IPR005967. (318 aa)    
Predicted Functional Partners:
thiP
Thiamine/thiamine pyrophosphate ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR005947.
 
 
 0.993
cysA
ABC transporter, ATP-binding protein; COG: COG3840; Pfam: PF00005; InterPro: IPR003439.
 
 
  0.969
sgrR
ABC transporter, substrate-binding protein, family 5; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
 
   
 0.542
EFE96060.1
Hypothetical protein; Belongs to the UPF0325 family.
  
     0.423
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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