STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiPThiamine/thiamine pyrophosphate ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR005947. (534 aa)    
Predicted Functional Partners:
thiB
Thiamine/thiamine pyrophosphate ABC transporter, thiamine/thiamine pyrophospate-binding protein; COG: COG4143; Pfam: PF01547; InterPro: IPR005967.
 
 
 0.993
cysA
ABC transporter, ATP-binding protein; COG: COG3840; Pfam: PF00005; InterPro: IPR003439.
 
 
 0.978
afuA
ABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547; InterPro: IPR006059.
 
  
 0.902
sgrR
ABC transporter, substrate-binding protein, family 5; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
 
     0.553
potA-2
Spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 0.530
matP
Hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.518
potG
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 0.468
thiK
Putative thiamine diphosphokinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
 
   
 0.443
EFE96731.1
Hypothetical protein; COG: COG3776; Pfam: PF06611; InterPro: IPR009525.
  
     0.435
efeU
FTR1 family protein; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
   
  
 0.412
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.