STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompAOmpA family protein; COG: COG2885; Pfam: PF00691; InterPro: IPR006665. (165 aa)    
Predicted Functional Partners:
EFE97694.1
Hypothetical protein.
 
 
 
 0.902
YfiN_2
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00672,PF00990; InterPro: IPR000160.
 
  
 0.802
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane.
  
 
 0.749
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.600
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
  
   0.571
MltD_3
Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF01464; InterPro: IPR008258.
  
     0.504
YjjK_2
ATP-binding cassette protein, ChvD family; COG: COG0488; Pfam: PF00005; InterPro: IPR003439.
       0.466
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
 
 
 0.466
dniR
Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF06474,PF01464,PF01476; InterPro: IPR008258.
 
 
 0.463
ygbF
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.462
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.