STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97704.1Putative protein smp; COG: COG3726. (225 aa)    
Predicted Functional Partners:
YdgH_1
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.770
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.768
helD
UvrD/REP helicase; COG: COG0210; Pfam: PF00580; InterPro: IPR000212.
  
     0.767
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.762
YdgH_2
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.762
BhsA_3
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.760
rof
Modulator of Rho-dependent transcription termination (ROF); COG: COG4568; Pfam: PF07073; InterPro: IPR009778.
  
     0.758
oapA
Opacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.757
EFE96463.1
Hypothetical protein.
  
     0.756
EFE97193.1
AsmA family protein; Pfam: PF05170; InterPro: IPR007844.
  
     0.755
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.