STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gutBPutative chlorophyll synthesis pathway protein BchC; COG: COG1063; Pfam: PF08240,PF00107; InterPro: IPR002085. (355 aa)    
Predicted Functional Partners:
lyxK
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577; Belongs to the FGGY kinase family.
 
  
 0.635
rbsB
Sugar-binding domain protein; COG: COG1879; Pfam: PF00532.
 
    0.585
xylB
Xylulokinase; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR006000.
  
 
 0.550
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
  
  
 0.522
sgbU
Putative hexulose-6-phosphate isomerase; COG: COG3623; Pfam: PF01261; InterPro: IPR004560.
 
   
 0.497
kbl
Glycine C-acetyltransferase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
  
 0.440
rbsA
ABC transporter, ATP-binding protein; COG: COG1129; Pfam: PF00005; InterPro: IPR003439.
  
    0.416
deoR
Putative sugar-binding domain protein; COG: COG2390; Pfam: PF04198; InterPro: IPR007324.
 
   
 0.409
araD
L-ribulose-5-phosphate 4-epimerase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
  
  
 0.407
rbsC2
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
  
    0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.