STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcdT_1Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00990; InterPro: IPR000160. (358 aa)    
Predicted Functional Partners:
EFE94894.1
Cyclic diguanylate phosphodiesterase (EAL) domain protein; COG: COG2200; Pfam: PF00563; InterPro: IPR001633.
  
 0.826
rtn
Cyclic diguanylate phosphodiesterase (EAL) domain protein; COG: COG2200; Pfam: PF00563; InterPro: IPR001633.
  
 0.822
yhjK
Diguanylate cyclase (GGDEF) domain protein; COG: COG2200; Pfam: PF00672,PF00990,PF00563; InterPro: IPR001633.
 
  
 0.775
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
 
 0.756
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
 
  
 0.694
CsrD
Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990,PF00563; InterPro: IPR001633.
 
  
 0.679
barA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
 0.649
evgS
Response regulator receiver domain protein; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR001638.
  
 0.616
Gmr_1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2200; Pfam: PF00990,PF00563; InterPro: IPR001633.
 
 
0.585
BvgS_2
PAS domain S-box protein; COG: COG0642; Pfam: PF08448,PF00512,PF02518,PF00072; InterPro: IPR003594.
 
 0.554
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.