STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97735.1Amidohydrolase family protein; COG: COG3618; Pfam: PF04909; InterPro: IPR006992. (285 aa)    
Predicted Functional Partners:
Lvr
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
  0.993
dgoA
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; COG: COG4948; Pfam: PF01188; InterPro: IPR015654; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.993
EFE97733.1
Hypothetical protein.
 
  
 0.961
EFE97737.1
FAH family protein; COG: COG0179; Pfam: PF01557; InterPro: IPR011234.
 
     0.890
fucP
L-fucose:H+ symporter permease; COG: COG0738; Pfam: PF07690; InterPro: IPR005275.
 
  
 0.869
ucpA
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
    0.850
LutR_1
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
     0.637
fucP-2
L-fucose:H+ symporter permease; COG: COG0738; Pfam: PF07690; InterPro: IPR005275.
  
  
 0.619
EFE96416.1
Hypothetical protein; COG: COG2706; InterPro: IPR015943.
  
     0.548
rhaU
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.540
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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