STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btr_2Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR000005. (326 aa)    
Predicted Functional Partners:
RhaS_7
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
 
 
 0.793
msmR
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
   0.775
Rob_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
   0.760
BglB_1
Glycosyl hydrolase family 3 N-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915; InterPro: IPR001764; Belongs to the glycosyl hydrolase 3 family.
 
     0.731
YihP
Transporter, major facilitator family protein; COG: COG2211; Pfam: PF07690; InterPro: IPR001927.
 
     0.704
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
   0.686
hpaA
4-hydroxyphenylacetate catabolism regulatory protein HpaA; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR011983.
 
   0.595
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
  
 0.560
flgG
Flagellar basal-body rod protein FlgG; COG: COG4786; Pfam: PF00460,PF06429; InterPro: IPR012834; Belongs to the flagella basal body rod proteins family.
    
   0.465
rhaR
AraC-like ligand binding domain protein; Activates expression of the rhaSR operon in response to L- rhamnose.
 
  
0.441
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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