STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BglB_1Glycosyl hydrolase family 3 N-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915; InterPro: IPR001764; Belongs to the glycosyl hydrolase 3 family. (781 aa)    
Predicted Functional Partners:
YihP
Transporter, major facilitator family protein; COG: COG2211; Pfam: PF07690; InterPro: IPR001927.
 
     0.828
Btr_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR000005.
 
     0.731
YicI_2
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.602
xynB
Glycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.501
EFE97768.1
Hypothetical protein.
       0.485
EFE97769.1
Hypothetical protein.
       0.485
EFE95430.1
Hypothetical protein; COG: COG4289.
  
     0.477
pbg
Beta-galactosidase trimerization domain protein; COG: COG1874; Pfam: PF02449,PF08532,PF08533; InterPro: IPR013781.
 
   
 0.467
tolA
Protein TolA; COG: COG3064; Pfam: PF06519; InterPro: IPR014161.
  
  
 0.457
EFE95611.1
Glycosyltransferase family 36; COG: COG3459; Pfam: PF06204,PF06165,PF06205; InterPro: IPR010383.
     
 0.432
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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