STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97798.1Hypothetical protein; Pfam: PF08786; InterPro: IPR014894. (150 aa)    
Predicted Functional Partners:
WapA_1
RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05488,PF05593,PF03527; InterPro: IPR001826.
  
 
 0.974
WapA_3
RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05488,PF05593,PF03527; InterPro: IPR001826.
  
 
 0.898
EFE97796.1
Hypothetical protein.
     
 0.759
nirB-2
Nitrite reductase [NAD(P)H], large subunit; COG: COG1251; Pfam: PF07992,PF00070,PF04324,PF03460,PF01077; InterPro: IPR012744; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
    0.549
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0139; Pfam: PF01502,PF01503; InterPro: IPR008179; In the N-terminal section; belongs to the PRA-CH family.
   
    0.548
rpmJ
Ribosomal protein L36; COG: COG0257; Pfam: PF00444; InterPro: IPR000473; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.539
rpmE
Ribosomal protein L31; COG: COG0254; Pfam: PF01197; InterPro: IPR002150.
   
    0.518
HcaD
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027.
   
    0.518
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
   
    0.518
urtA
Urea ABC transporter, urea binding protein; COG: COG0683.
   
    0.518
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.