STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afuAABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547; InterPro: IPR006059. (343 aa)    
Predicted Functional Partners:
fbpB
ABC transporter, permease protein; COG: COG1178; Pfam: PF00528.
 
 
  0.980
potA
ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
  
 0.960
thiP
Thiamine/thiamine pyrophosphate ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR005947.
 
  
 0.902
uhpC
Transporter, major facilitator family protein; COG: COG2271; Pfam: PF07690; InterPro: IPR011701.
 
     0.823
uhpB
Histidine kinase; COG: COG3851; Pfam: PF05231,PF07730,PF02518; InterPro: IPR007895.
 
     0.706
uhpA
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
 
   
 0.604
efeU
FTR1 family protein; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
   
  
 0.536
potA-2
Spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
  
 0.470
potG
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 0.470
EFE94514.1
Periplasmic binding protein; COG: COG0614; Pfam: PF01497; InterPro: IPR002491.
 
  
 0.449
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.