STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97808.1Hypothetical protein; COG: COG3811; Belongs to the UPF0386 family. (85 aa)    
Predicted Functional Partners:
EFE95722.1
Chloride transporter, ClC family; COG: COG0038; Pfam: PF00654; InterPro: IPR014743.
  
     0.618
vmtV2
Bacterial group 2 Ig-like protein; COG: COG5492; Pfam: PF02368; InterPro: IPR003343.
  
     0.604
YjhP
Methyltransferase domain protein; Pfam: PF08241.
 
     0.554
EFE96603.1
Hypothetical protein; COG: COG5471.
  
     0.454
EFE97100.1
Phage tail tape measure protein, TP901 family; COG: COG5283; InterPro: IPR010090.
  
     0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.