STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcrBATPase family associated with various cellular activities (AAA); COG: COG1401; Pfam: PF07728; InterPro: IPR011704. (685 aa)    
Predicted Functional Partners:
EFE97637.1
Hypothetical protein; COG: COG4268.
 
 
 0.997
EFE97638.1
Hypothetical protein.
 
     0.849
EFE97640.1
DEAD/DEAH box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
 
     0.744
hsdR
Helicase C-terminal domain protein; COG: COG4096; Pfam: PF00271; InterPro: IPR001650; overlaps another CDS with the same product name.
 
  
 0.601
ivy
Inhibitor of vertebrate lysozyme; Pfam: PF08816; InterPro: IPR014453.
  
     0.592
EFE93495.1
Hypothetical protein; Pfam: PF04865.
  
     0.569
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.561
EFE98315.1
DNA circulation, N-terminal domain protein; Pfam: PF07157; InterPro: IPR009826.
  
     0.560
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
 
    0.529
Era_1
Hypothetical protein; COG: COG3596; Pfam: PF01926; InterPro: IPR002917.
 
     0.524
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.