STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97442.1Hypothetical protein; Pfam: PF02463; InterPro: IPR003395. (548 aa)    
Predicted Functional Partners:
hsdS
Type I restriction modification DNA specificity domain protein; COG: COG0732; Pfam: PF01420; InterPro: IPR000055.
 
     0.828
hsdM
N-6 DNA Methylase; COG: COG0286; Pfam: PF02384; InterPro: IPR003356.
 
     0.823
EFE95236.1
ThiF family protein; Pfam: PF00899; InterPro: IPR016040.
  
     0.764
EFE95234.1
Hypothetical protein; Pfam: PF01734; InterPro: IPR002641.
  
     0.747
EFE97441.1
Hypothetical protein.
       0.741
EFE97443.1
Hypothetical protein.
       0.723
EFE95608.1
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
     0.657
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
  
     0.633
hsdR2
Type III restriction enzyme, res subunit; COG: COG4096; Pfam: PF04313,PF04851; InterPro: IPR014001; overlaps another CDS with the same product name.
 
     0.631
hsdR
Helicase C-terminal domain protein; COG: COG4096; Pfam: PF00271; InterPro: IPR001650; overlaps another CDS with the same product name.
 
     0.613
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.