STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97443.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
hsdM
N-6 DNA Methylase; COG: COG0286; Pfam: PF02384; InterPro: IPR003356.
  
 
 0.972
hsdR
Helicase C-terminal domain protein; COG: COG4096; Pfam: PF00271; InterPro: IPR001650; overlaps another CDS with the same product name.
  
 
 0.967
hsdS
Type I restriction modification DNA specificity domain protein; COG: COG0732; Pfam: PF01420; InterPro: IPR000055.
      0.886
EFE93336.1
Hypothetical protein.
  
 
 0.882
hsdR2
Type III restriction enzyme, res subunit; COG: COG4096; Pfam: PF04313,PF04851; InterPro: IPR014001; overlaps another CDS with the same product name.
  
 
 0.734
EFE97442.1
Hypothetical protein; Pfam: PF02463; InterPro: IPR003395.
       0.723
EFE97441.1
Hypothetical protein.
       0.681
EFE93579.1
Hypothetical protein; COG: COG3593.
  
  
 0.669
mcrB
ATPase family associated with various cellular activities (AAA); COG: COG1401; Pfam: PF07728; InterPro: IPR011704.
  
  
 0.433
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.