STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepACytosol aminopeptidase family, catalytic domain protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (503 aa)    
Predicted Functional Partners:
gshB
Glutathione synthase; COG: COG0189; Pfam: PF02951,PF02955; InterPro: IPR006284; Belongs to the prokaryotic GSH synthase family.
   
 
 0.926
pepN
Membrane alanyl aminopeptidase; COG: COG0308; Pfam: PF01433; InterPro: IPR012779.
   
 0.923
pepD
Xaa-His dipeptidase; COG: COG2195; Pfam: PF01546,PF07687; InterPro: IPR001160.
   
 
 0.921
pepB
Cytosol aminopeptidase family, catalytic domain protein; Probably plays an important role in intracellular peptide degradation.
  
  
 
0.921
ggt
Gamma-glutamyltransferase; COG: COG0405; Pfam: PF01019; InterPro: IPR000101.
     
 0.910
gshA
Glutamate--cysteine ligase; COG: COG2918; Pfam: PF04262; InterPro: IPR006334; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.910
ggt-3
Gamma-glutamyltransferase; COG: COG0405; Pfam: PF01019; InterPro: IPR000101.
     
 0.910
YbdK_1
Carboxylate-amine ligase, YbdK family; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.
     
  0.900
YbdK_2
Carboxylate-amine ligase, YbdK family; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.
     
  0.900
YbdK_3
Hypothetical protein; 6.3.-.-.
     
  0.900
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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