STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97487.1Hypothetical protein; COG: COG3787; Belongs to the UPF0306 family. (144 aa)    
Predicted Functional Partners:
YdgH_3
Hypothetical protein; Pfam: PF07338.
  
     0.682
EFE96912.1
Hypothetical protein; Overlaps another CDS with the same product name; 3.6.1.-.
  
     0.637
LpoB
Hypothetical protein; COG: COG3417.
  
     0.619
Rne
Hypothetical protein; 3.1.4.-.
  
     0.609
mukB
MukB N-terminal domain protein; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.589
pgpB-2
Phosphatidylglycerophosphatase B; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
  
     0.586
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.576
EFE97488.1
Hypothetical protein.
       0.536
cnu
OriC-binding nucleoid-associated protein; Pfam: PF05321; InterPro: IPR007985.
  
     0.535
EFE94171.1
Hypothetical protein.
  
     0.533
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.