STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97503.1ABC-2 type transporter; Pfam: PF01061. (384 aa)    
Predicted Functional Partners:
EFE97504.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG0845; Pfam: PF00529.
 
  
 0.954
YbhR_1
ABC-2 type transporter; Pfam: PF01061.
 
   
0.859
mrfG
Fimbrial protein; Pfam: PF00419; InterPro: IPR000259.
  
     0.643
macB
ABC transporter, ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
   
 0.555
papC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
     0.504
yhbW
Luciferase family oxidoreductase, FMN-dependent, PP_0088 family; COG: COG2141; Pfam: PF00296; InterPro: IPR016048.
       0.487
ccmA2
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
 
  
 0.464
EFE93552.1
YcaO-like family; COG: COG1944; Pfam: PF02624; InterPro: IPR003776.
  
  
 0.446
EFE97161.1
Hypothetical protein.
  
     0.427
EFE93930.1
CAAX amino terminal protease family protein; COG: COG1266; Pfam: PF02517; InterPro: IPR003675.
  
  
 0.403
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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