STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdgH_1Hypothetical protein; Pfam: PF07338; InterPro: IPR010854. (99 aa)    
Predicted Functional Partners:
EFE97704.1
Putative protein smp; COG: COG3726.
  
     0.770
pspG
Phage shock protein G; InterPro: IPR014318.
  
     0.764
TomB
Hypothetical protein.
  
     0.762
MliC
Putative Membrane-bound lysozyme inhibitor of C-type lysozyme; COG: COG3895.
  
     0.761
yfhB
HAD hydrolase, family IF; COG: COG0560; InterPro: IPR006435.
  
     0.759
aaeX
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
   
 0.756
YciC
Hypothetical protein; Pfam: PF06790; InterPro: IPR009627.
  
     0.756
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.750
EFE96463.1
Hypothetical protein.
  
     0.749
cpxP
Periplasmic repressor CpxP; COG: COG3678; Pfam: PF07813.
  
     0.742
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.