STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97543.1Hypothetical protein; COG: COG2911; Pfam: PF04357; InterPro: IPR007452. (1272 aa)    
Predicted Functional Partners:
ytfM
Outer membrane protein, OMP85 family; COG: COG0729; Pfam: PF07244,PF01103; InterPro: IPR000184.
 
 
 0.992
mukB
MukB N-terminal domain protein; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.741
YtfP
AIG2-like family protein; COG: COG2105; Pfam: PF03674; InterPro: IPR005347.
 
     0.736
Rne
Hypothetical protein; 3.1.4.-.
  
     0.713
fruR
D-fructose-responsive transcription factor; COG: COG1609.
  
     0.667
pgpB-2
Phosphatidylglycerophosphatase B; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
 
    0.655
yedA
Carboxylate/Amino Acid/Amine Transporter; Pfam: PF00892; InterPro: IPR004779.
  
     0.612
EFE96511.1
Putative signal transduction protein; COG: COG3103.
 
     0.598
aaeB
Fusaric acid resistance protein conserved region; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
     0.591
tsx
Nucleoside-specific channel-forming protein Tsx; COG: COG3248; Pfam: PF03502; InterPro: IPR003055.
  
     0.578
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.